| Round 1 |
| 1 | VAT | Kazuhiro Sasaki | RP | Sea |
| 2 | CAR | Barry Zito | SP | Oak |
| 3 | PHI | Jeff D'Amico | SP | Mil |
| 4 | PHX | Rafael Furcal | SS | Atl |
| 5 | HON | Freddy Garcia | SP | Sea |
| 6 | COL | Frank Castillo | SP | Bos |
| 7 | HBK | Jarrod Washburn | SP | Ana |
| 8 | BRK | Felix Rodriguez | RP | SF |
| 9 | KEN | Javier Vazquez | SP | Mtl |
| 10 | NWK | Chris Stynes | 3B | Cin |
| 11 | AUS | Mitch Meluskey | C | Hou |
| 12 | VAN | Armando Benitez | RP | Bal |
| 13 | ARK | Lance Berkman | OF | Hou |
| 14 | STP | Ray King | RP | Mil |
| Round 2 |
| 15 | VAT | Antonio Alfonseca | RP | Fla |
| 16 | CAR | Pat Burrell | 1B | Phi |
| 17 | PHI | Curt Leskanic | RP | Mil |
| 18 | PHX | Jim Mecir | RP | Oak |
| 19 | HON | Glendon Rusch | SP | NYM |
| 20 | COL | Christian Guzman | SS | Min |
| 21 | HBK | Chris Truby | 3B | Hou |
| 22 | BRK | Chuck Smith | SP | Fla |
| 23 | KEN | Julio Lugo | SS | Hou |
| 24 | NWK | Woody Williams | SP | SD |
| 25 | AUS | Osvaldo Fernandez | SP | Cin |
| 26 | VAN | Eric Chavez | 3B | Oak |
| 27 | ARK | Mike Remlinger | RP | Atl |
| 28 | STP | Matt Herges | RP | LA |
| 29 | COL (from HAW) | Placido Polanco | IF | StL |
| Round 3 |
| 30 | VAT | Kirk Rueter | SP | SF |
| 31 | CAR | Scott Strickland | RP | Mtl |
| 32 | PHI | Mark Fyhrie | RP | Ana |
| 33 | PHX | Pedro Astacio | SP | Col |
| 34 | HON | Jeff Tam | RP | Oak |
| 35 | COL | Kelly Wunsch | RP | CWS |
| 36 | HBK | Andres Galarraga | 1B | Tex |
| 37 | BRK | John Vander Wal | OF | Pit |
| 38 | KEN | Jose Paniagua | RP | Sea |
| 39 | NWK | Rod Beck | RP | Bos |
| 40 | ARK (from AUS) | Randy Wolf | SP | Phi |
| 41 | VAN | Brian Tollberg | SP | SD |
| 42 | ARK | Fernando Vina | 2B | StL |
| 43 | STP | Ricardo Rincon | RP | Cle |
| 44 | ARK (from HAW) | Byung Hyun Kim | RP | Arz |
| Round 4 |
| 45 | VAT | Adam Kennedy | 2B | Ana |
| 46 | CAR | Justin Speier | RP | Cle |
| 47 | PHI | Terrance Long | OF | Oak |
| 48 | PHX | Greg Colbrunn | 1B | Arz |
| 49 | HON | Dmitri Young | OF | Cin |
| 50 | COL | Jose Mercedes | SP | Bal |
| 51 | HBK | Adam Eaton | SP | SD |
| 52 | BRK | Denny Hocking | IF | Min |
| 53 | KEN | Steve Sparks | SP | Det |
| 54 | NWK | Tomo Ohka | SP | Bos |
| 55 | AUS | Mark Fetters | RP | LA |
| 56 | VAN | Tony Armas | SP | Mtl |
| 57 | VAN (from ARK) | Jose Jimenez | RP | Col |
| 58 | STP | Ben Molina | C | Ana |
| Round 5 |
| 59 | VAT | Latroy Hawkins | RP | Min |
| 60 | CAR | Ben Sheets | SP | Mil |
| 61 | PHI | Rich Garces | RP | Bos |
| 62 | PHX | Jeff Frye | 2B | Col |
| 63 | HON | Eric Young | 2B | Cub |
| 64 | ARK (from COL) | Mike James | RP | StL |
| 65 | HBK | John Franco | RP | NYM |
| 66 | BRK | Bobby Estalella | C | SF |
| 67 | KEN | Kerry Ligtenberg | RP | Atl |
| 68 | NWK | Arthur Rhodes | RP | Sea |
| 69 | AUS | Rick White | RP | NYM |
| 70 | VAN | Bob Wells | RP | Min |
| 71 | STP | Geoff Blum | 3B | Mtl |
| Round 6 |
| 72 | VAT | Sandy Alomar | C | Cle |
| 73 | CAR | Rich Aurilia | SS | SF |
| 74 | CAR (from PHI) | Dave Weathers | RP | Mil |
| 75 | PHX | Tony Eusebio | C | Hou |
| 76 | HON | Gil Heredia | SP | Oak |
| 77 | COL | Mike Williams | RP | Pit |
| 78 | HBK | Brad Ausmus | C | Hou |
| 79 | BRK | Tony Womack | SS | Arz |
| 80 | KEN | Kevin Walker | RP | SD |
| 81 | NWK | Benny Agbayani | OF | NYM |
| 82 | AUS | Herbert Perry | 3B | TB |
| 83 | VAN | Scott Hatteberg | C | Bos |
| 84 | STP | Tim Worrell | RP | SD |
| 85 | ARK (from ARZ) | Greg Zaun | C | KC |
| Round 7 |
| 86 | VAT | Brian Daubach | 1B | Bos |
| 87 | CAR | Luis Alicea | 2B | Tex |
| 88 | PHI | Damian Miller | C | Arz |
| 89 | PHX | Mark Redman | SP | Min |
| 90 | HON | Aaron Boone | 3B | Cin |
| 91 | COL | Einar Diaz | C | Cle |
| 92 | HBK | Denny Neagle | SP | Col |
| 93 | BRK | Jay Payton | OF | NYM |
| 94 | KEN | Brent Mayne | C | Col |
| 95 | CAR (from NWK) | Dan Plesac | RP | Arz |
| 96 | AUS | Mark Gardner | SP | SF |
| 97 | VAN | Daryle Ward | OF | Hou |
| 98 | PHI (from ARK) | Neifi Perez | SS | Col |
| 99 | STP | Joe Girardi | C | Chi |
| Round 8 |
| 100 | VAT | Craig Paquette | 3B | StL |
| 101 | CAR | A.J.Burnett | SP | Fla |
| 102 | PHI | Mark Loretta | SS | Mil |
| 103 | PHX | Rusty Greer | OF | Tex |
| 104 | HON | Chad Kreuter | C | LA |
| 105 | COL | Dave McCarty | 1B | KC |
| 106 | HBK | Damian Easley | 2B | Det |
| 107 | BRK | Paul Abbott | P | Sea |
| 108 | KEN | Melvin Mora | SS | Bal |
| 109 | NWK | Ricky Guttierez | SS | Cub |
| 120 | ARK (from AUS) | Mark Quinn | OF | KC |
| 111 | VAN | Anthony Telford | RP | Mtl |
| 112 | STP | Mark Kotsay | OF | Fla |
| Round 9 |
| 113 | VAT | Andy Benes | SP | StL |
| 114 | CAR | Hipolito Pichardo | RP | Bos |
| 115 | PHI | Travis Lee | 1B | Phi |
| 116 | PHX | Ichiro Suzuki | OF | Sea |
| 117 | HON | Jose Cruz | OF | Tor |
| 118 | COL | Carlos Guillen | 3B | Sea |
| 119 | HBK | Preston Wilson | OF | Fla |
| 120 | BRK | Adrian Brown | OF | Pit |
| 121 | KEN | Jeff Conine | 3B | Bal |
| 122 | NWK | Eric Davis | OF | StL |
| 123 | AUS | Sidney Ponson | SP | Bal |
| 124 | VAN | Bill Simas | RP | CWS |
| 125 | ARK | Brad Penny | SP | Fla |
| 126 | STP | Tino Martinez | 1B | NYY |
| Round 10 |
| 127 | VAT | Mike Cameron | OF | Sea |
| 128 | CAR | Dante Bichette | OF | Bos |
| 129 | PHI | Chuck Knoblauch | 2B | Min |
| 130 | PHX | Mike Lamb | 3B | Tex |
| 131 | HON | Alex Gonzalez | SS | Tor |
| 132 | COL | Jay Canizaro | 2B | Min |
| 133 | HBK | David Bell | 3B | Sea |
| 134 | BRK | Ron Belliard | 2B | Mil |
| 135 | KEN | Derrick Lee | 1B | Fla |
| 136 | NWK | Mike Stanley | 1B | Bos |
| 137 | AUS | Antonio Osuna | RP | LA |
| 138 | ARK | Glenallen Hill | OF | NYY |
| 139 | STP | Shigetoshi Hasegawa | RP | Ana |
| Round 11 |
| 140 | VAT | Matt Mantei | RP | Arz |
| 141 | CAR | Eric Owens | OF | SD |
| 142 | PHI | Jason Varitek | C | Bos |
| 143 | PHX | Torii Hunter | OF | Min |
| 144 | HON | Rob Ramsay | RP | Sea |
| 145 | COL | Matt Anderson | RP | Det |
| 146 | HBK | Aubrey Huff | 3B | TB |
| 147 | BRK | John Wetteland | RP | Tex |
| 148 | KEN | Eddie Guardado | RP | Bos |
| 149 | NWK | Kevin Tapani | SP | Cub |
| 150 | AUS | Damian Jackson | SS | SD |
| 151 | VAN | Ruben Mateo | OF | Tex |
| 152 | STP | John Rauch | SP | CWS |
| Round 12 |
| 153 | VAT | J.T.Snow | 1B | SF |
| 154 | NWK (from CAR) | Henry Blanco | C | Mil |
| 155 | PHI | Erubiel Durazo | 1B | Arz |
| 156 | PHX | Jose Ortiz | 2B | Oak |
| 157 | HON | Jacques Jones | OF | Min |
| 158 | COL | Doug Henry | RP | SF |
| 159 | HBK | Brian Moehler | SP | Det |
| 160 | BRK | Scott Spiezio | IF | Ana |
| 161 | KEN | Jay Bell | 2B | Arz |
| 162 | NWK | Mike Stanton | RP | NYY |
| 163 | AUS | Juan Acevedo | RP | Mil |
| 164 | VAN | Billy Wagner | RP | Hou |
| 165 | ARK | John Riedling | SP | Cin |
| 166 | STP | Adrian Hernandez | SP | NYY |
| Round 13 |
| 167 | VAT | Rey Sanchez | SS | KC |
| 168 | CAR | Joe Oliver | C | Sea |
| 169 | PHI | Jeff Shaw | RP | LA |
| 170 | PHX | Hee Seop Choi | 1B | Cub |
| 171 | HON | Jon Garland | SP | CWS |
| 172 | COL | Russell Branyan | 1B | Cle |
| 173 | HBK | Vernon Wells | OF | Tor |
| 174 | BRK | Royce Clayton | SS | Tex |
| 175 | KEN | Josias Manzanillo | RP | Pit |
| 176 | NWK | Nick Johnson | 1B | NYY |
| 177 | AUS | Paul Wilson | SP | TB |
| 178 | VAN | Elmer Dessens | SP | Cin |
| 179 | ARK | Luis Sojo | IF | NYY |
| 180 | STP | Andy Morales | 3B | NYY |
| Round 14 |
| 181 | VAT | Al Martin | OF | Sea |
| 182 | CAR | Ben Petrick | C | Col |
| 183 | PHI | Bud Smith | SP | StL |
| 184 | PHX | Mike Darr | OF | SD |
| 185 | HON | Russell Ortiz | SP | SF |
| 186 | COL | Adam Piatt | 3B | Oak |
| 187 | HBK | C.C.Sabathia | SP | Cle |
| 188 | BRK | Rey Ordonez | SS | NYM |
| 189 | KEN | Rob Bell | SP | Cin |
| 190 | NWK | Peter Bergeron | OF | Mtl |
| 191 | AUS | Pokey Reese | 2B | Cin |
| 192 | VAN | Carlos Febles | 2B | KC |
| 193 | ARK | Danys Baez | SP | Cle |
| 194 | STP | D'angelo Jimenez | SS | NYY |
| Round 15 |
| 195 | VAT | Jimmy Rollins | SS | Phi |
| 196 | CAR | Olmedo Saenz | IF | Oak |
| 197 | PHI | Shane Spencer | OF | NYY |
| 198 | PHX | Juan Pierre | OF | Col |
| 199 | HON | Britt Reames | SP | Mtl |
| 200 | COL | Henry Rodriguez | OF | NYY |
| 201 | HBK | Marcus Giles | 2B | Atl |
| 202 | BRK | Odalis Perez | SP | Atl |
| 203 | KEN | Todd Zeile | 1B | NYM |
| 204 | NWK | Dan Miceli | RP | Fla |
| 205 | AUS | Benito Santiago | C | Phi |
| 206 | VAN | Sean Burroughs | 3B | SD |
| 207 | ARK | Alphonso Soriano | SS | NYY |
| 208 | STP | Makato Suzuki | SP | KC |
| Supplemental |
| Round 1 |
| 1 | VAT | Rick Aguilera | RP | Cub |
| 2 | CAR | Mark Texeira | P | |
| 3 | PHI | Luis Vizcaino | RP | Oak |
| 4 | PHX | Geraldo Guzman | SP | Arz |
| 5 | HON | Joe Crede | 3B | CWS |
| 6 | HBK | Milton Bradley | OF | Mtl |
| 7 | NWK | Lou Pote | P | Ana |
| 8 | VAN | Michael Barrett | C | Mtl |
| 8 | ARK | Carlos Beltran | OF | KC |
| 10 | STP | Ryan Kohlmeier | RP | Bal |
| Round 2 |
| 11 | VAT | Timo Perez | OF | NYM |
| 12 | CAR | Grant Roberts | SP | NYM |
| 13 | PHI | Aaron Myette | SP | CWS |
| 14 | PHX | Chris Richard | 1B | Bal |
| 15 | HON | Corey Patterson | OF | Cub |
| 16 | HBK | Jeff Austin | P | KC |
| 17 | NWK | Steve Trachsel | SP | NYM |
| 18 | VAN | Wade Miller | SP | Hou |
| 19 | ARK | Dee Brown | OF | KC |
| Round 3 |
| 20 | CAR | Julio Zuleta | 1B | Cub |
| 21 | PHI | Kip Wells | SP | CWS |
| 22 | HON | Alex Escobar | OF | NYM |
| 23 | HBK | Al Hawkins | P | Mil |
| 24 | NWK | Ed Taubensee | C | Cin |
| 25 | VAN | Kurt Ainsworth | SP | SF |
| 26 | ARK | Pedro Feliz | 3B | SF |
| Round 4 |
| 27 | CAR | Chris Donnels | OF | LA |
| 28 | PHI | Eric Gagne | SP | LA |
| 29 | HON | Jason Marquis | P | Atl |
| 30 | HBK | Joe Nathan | SP | SF |
| 31 | NWK | Butch Huskey | OF | Bos |
| 32 | VAN | Bret Saberhagen | SP | Bos |
| 33 | ARK | Blake Stein | SP | KC |
| Round 5 |
| 34 | CAR | Jose Canseco | OF | Ana |
| 35 | PHI | Tsuyoshi Shinjo | OF | NYM |
| 36 | HON | John Halama | SP | Sea |
| 37 | HBK | Greg Vaughn | OF | TB |
| 38 | NWK | David Cone | P | Bos |
| 39 | VAN | Shane Reynolds | SP | Hou |
| 40 | ARK | Matt Kinney | P | Min |
| Round 6 |
| 41 | CAR | Larry Barnes | 1B | Ana |
| 42 | PHI | Rico Brogna | 1B | Bos |
| 43 | HON | Ramon Ortiz | SP | Ana |
| 44 | HBK | Adam Johnson | P | Min |
| 45 | NWK | Sterling Hitchcock | SP | SD |
| 46 | VAN | Julian Tavarez | P | Col |
| 47 | ARK | Jose Lima | SP | Hol |
| Round 7 |
| 48 | CAR | Jack Cust | OF | Arz |
| 49 | PHI | Wilson Alvarez | SP | TB |
| 50 | HON | Mark Mulder | SP | Oak |
| 51 | HBK | Pat Hentgen | SP | Bal |
| 52 | NWK | Pete Harnisch | P | Cin |
| 53 | VAN | Omar Daal | SP | Phi |
| 54 | ARK | Valerio De Los Santos | P | Mil |
| Round 8 |
| 55 | CAR | Bobby Chouinard | RP | Arz |
| 56 | PHI | Todd Van Poppel | RP | Cub |
| 57 | HON | Luke Prokopec | SP | LA |
| 58 | NWK | Ramiro Mendoza | RP | NYY |
| 59 | ARK | Steve Rain | RP | Cub |
| Round 9 |
| 60 | CAR | Mike Timlin | RP | StL |
| 61 | PHI | Roy Halladay | SP | Tor |
| 62 | HON | Horacio Estrada | P | Mil |
| 63 | NWK | Pat Meares | SS | Pit |
| 64 | ARK | Jeremy Giambi | OF | Oak |
| Round 10 |
| 65 | NWK | Aramis Ramirez | 3B | Pit |
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